Meneguzzi M, Bravo J, Gaire TN, Ferm P, Torremorell M, Boucher C, Noyes NR.
Enriched long-read sequencing of co-circulating viruses in complex samples.
Molecular Biology and Evolution. 2025;42(11):msaf261.
doi:10.1093/molbev/msaf261
Gaire TN, Young J, Wehri T, Schwartz M, Singer R, Pieters M, Noyes NR.
The impact of pooling on the observed microbiome profile of preweaned piglet feces.
FEMS Microbiology Ecology. 2025;101(6):fiaf058.
doi:10.1093/femsec/fiaf058
Asmus AE, Gaire TN, Heimer KM, Belk KE, Singer RS, Johnson TJ, Noyes NR.
Fresh pork microbiota is temporally dynamic and compositionally diverse across meat, contact surfaces, and processing lines in a pork processing facility.
Applied and Environmental Microbiology. 2025;91(4):e0004425.
doi:10.1128/aem.00044-25
Asmus AE, Gaire TN, Schweisthal KJ, Staben SM, Noyes NR.
Microbiome characterization of two fresh pork cuts during production in a pork fabrication facility.
Microbiology Spectrum. 2025;13(3):e0220924.
doi:10.1128/spectrum.02209-24
Slizovskiy IB, Gaire TN, Ferm PM, Odland CA, Dee SA, Nerem J, Bravo JE, Kimball AD, Boucher C, Noyes NR.
Reducing skin microbiome exposure impacts through swine farm biosecurity.
GigaScience. 2025;14:giaf062.
doi:10.1093/gigascience/giaf062
2024
Kwak N, Tsameret S, Gaire TN, Mendoza KM, Cortus EL, Cardona C, Noyes N, Li J.
Influence of rainfall on size-resolved bioaerosols around a livestock farm.
Science of the Total Environment. 2024;954:176184.
doi:10.1016/j.scitotenv.2024.176184
Gaire TN, Odland C, Zhang B, Slizovskiy I, Jorgenson B, Wehri T, Meneguzzi M, Wass B, Schuld J, Hanson D, Doster E, Singer J, Cannon J, Asmus A, Ray T, Dee S, Nerem J, Davies P, Noyes NR.
Slaughtering processes impact microbial communities and antimicrobial resistance genes of pig carcasses.
Science of the Total Environment. 2024;946:174394.
doi:10.1016/j.scitotenv.2024.174394
Gaire TN, Scott HM, Noyes NR, Ericsson AC, Tokach MD, William H, Menegat MB, Vinasco J, Nagaraja TG, Volkova VV.
Temporal dynamics of the fecal microbiome in female pigs from early life through estrus, parturition, and weaning of the first litter of piglets.
Animal Microbiome. 2024;6(1):7.
doi:10.1186/s42523-024-00294-8
2023
Gaire TN, Scott HM, Noyes NR, Ericsson AC, Tokach MD, Menegat MB, Vinasco J, Roenne B, Ray T, Nagaraja TG, Volkova VV.
Age influences the temporal dynamics of microbiome and antimicrobial resistance genes among fecal bacteria in a cohort of production pigs.
Animal Microbiome. 2023;5(1):2.
doi:10.1186/s42523-022-00222-8
Diaz GR, Gaire TN, Ferm P, Case L, Caixeta LS, Goldsmith TJ, Armstrong J, Noyes NR.
Effect of castration timing and weaning strategy on the taxonomic and functional profile of ruminal bacteria and archaea of beef calves.
Animal Microbiome. 2023;5(1):61.
doi:10.1186/s42523-023-00284-2
2022
Gaire TN, Odland C, Zhang B, Ray T, Doster E, Nerem J, Dee S, Davies P, Noyes N.
The impacts of viral infection and subsequent antimicrobials on the microbiome-resistome of growing pigs.
Microbiome. 2022;10(1):118.
doi:10.1186/s40168-022-01312-0
Gaire TN, Noyes NR, Scott HM, Ericsson AC, Dunmire K, Tokach MD, Paulk CB, Vinasco J, Roenne B, Nagaraja TG, Volkova VV.
A longitudinal investigation of the effects of age, dietary fiber type and level, and injectable antimicrobials on the fecal microbiome and antimicrobial resistance of finisher pigs.
Journal of Animal Science. 2022;100(9):skac217.
doi:10.1093/jas/skac217
Ray T, Gaire TN, Dean CJ, Rowe S, Godden SM, Noyes NR.
The microbiome of common bedding materials before and after use on commercial dairy farms.
Animal Microbiome. 2022;4(1):18.
doi:10.1186/s42523-022-00171-2
2021 and earlier
Gaire TN, Scott HM, Sellers L, Nagaraja TG, Volkova VV.
Age dependence of antimicrobial resistance among fecal bacteria in animals: a scoping review.
Frontiers in Veterinary Science. 2021;7:622495.
doi:10.3389/fvets.2020.622495
Gaire TN, Salas J, Dunmire KM, Paulk CB, Tokach MD, Nagaraja TG, Volkova VV.
Faecal concentrations of ceftiofur metabolites in finisher pigs administered intramuscularly with ceftiofur.
Veterinary Medicine and Science. 2021;7(5):1800–1806.
doi:10.1002/vms3.520
Wen X, Gehring R, Riviere JE, Lubbers BV, Gaire TN, Wyche B, Fox B, Quichocho V, Volkova VV.
Variation in fluoroquinolone pharmacodynamic parameter values among isolates of two bacterial pathogens of bovine respiratory disease.
Scientific Reports. 2018;8:10553.
doi:10.1038/s41598-018-28602-8
Devleesschauwer B, Aryal A, Sharma BK, Ale A, Declercq A, Depraz S, Gaire TN, Gongal G, Karki S, Pandey BD, Pun SB, Duchateau L, Dorny P, Speybroeck N.
Epidemiology, impact and control of rabies in Nepal: a systematic review.
PLOS Neglected Tropical Diseases. 2016;10(2):e0004461.
doi:10.1371/journal.pntd.0004461
